Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12490504 chr3:108213825 C/G 0.000469 178 24.37 43.67 10.07 KM Plot
PCPG rs12493634 chr3:105762869 C/T 0.000445 175 25.97 19.85 20.08 KM Plot
PCPG rs12515155 chr5:8025739 A/T 8.36E-5 170 25.53 27.2 12.15 KM Plot
PCPG rs12578495 chr12:53503208 G/A 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs12579710 chr12:53502999 T/C 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs12580912 chr12:53503224 A/T 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs12582555 chr12:26888861 G/A 8.74E-5 178 24.5 27.87 5.97 KM Plot
PCPG rs125872 chr1:201635798 C/T 1.7E-6 178 27.4 17.4 19.3 KM Plot
PCPG rs12596182 chr16:90022603 C/T 1.26E-8 172 25.67 20.2 6.62 KM Plot
PCPG rs12596206 chr16:90022738 C/T 1.26E-8 172 25.67 20.2 6.62 KM Plot
PCPG rs12596362 chr16:89582684 C/T 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs12596492 chr16:89957169 T/G 0.000165 176 25.87 20.2 36.37 KM Plot
PCPG rs12596583 chr16:90029105 G/C 1.09E-8 172 25.77 20.28 6.62 KM Plot
PCPG rs12596934 chr16:89841605 T/G 0.000181 176 25.87 20.2 36.37 KM Plot
PCPG rs12597296 chr16:89822331 C/T 0.000179 176 25.87 20.17 36.37 KM Plot